Gostic 2020 - Practical Considerations for Measuring Rt
Routing Summary
Full capture of Gostic et al. (2020), PLoS Comput Biol 16(12): e1008409, used as the open substitute for Cori et al. (2013). 5 notes.
- Need the paper on a page and section map? → Gostic 2020 - Practical Considerations for Measuring Rt - Overview
- Need definitions, Cori posterior, Wallinga-Teunis, Bettencourt-Ribeiro? → Gostic 2020 - Instantaneous vs Case Reproductive Number and the Three Estimators
- Need the renewal equation, generation vs serial interval, bias? → Gostic 2020 - Generation Interval and the Renewal Equation
- Need delays, deconvolution, right truncation? → Gostic 2020 - Rt Estimation Pipeline and Right-Truncation Bias
- Need ascertainment, smoothing windows, recommendations? → Gostic 2020 - Observation Process, Smoothing Windows and Recommendations
Concept Map
| Concept | Note | Type | Depends On | Key Result |
|---|---|---|---|---|
| Instantaneous vs case | Gostic 2020 - Instantaneous vs Case Reproductive Number and the Three Estimators | definition | renewal equation | case leads by about one mean GI |
| Generation-interval bias | Gostic 2020 - Generation Interval and the Renewal Equation | theorem | renewal equation | bias grows away from |
| Delay and truncation | Gostic 2020 - Rt Estimation Pipeline and Right-Truncation Bias | concept | forward delay | backward convolution over-smooths |
| Smoothing window | Gostic 2020 - Observation Process, Smoothing Windows and Recommendations | concept | Cori estimator | report at midpoint |
Notes
- Gostic 2020 - Practical Considerations for Measuring Rt - Overview — CONTAINS: summary, substitution note, Source Map.
- Gostic 2020 - Instantaneous vs Case Reproductive Number and the Three Estimators — CONTAINS: definitions, Cori posterior, worked numbers, Python.
- Gostic 2020 - Generation Interval and the Renewal Equation — CONTAINS: intrinsic vs observed GI, serial interval, bias.
- Gostic 2020 - Rt Estimation Pipeline and Right-Truncation Bias — CONTAINS: forward delay, shift/convolve/deconvolve table, truncation.
- Gostic 2020 - Observation Process, Smoothing Windows and Recommendations — CONTAINS: ascertainment, window rule, recommendations.
Sources
- Gostic 2020 - Practical Considerations for Measuring the Effective Reproductive Number Rt